Apr 12, 2026 · What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. It is entirely orientated towards rooted, time-measured phylogenies inferred …

FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures.

Nov 14, 2018 · BEAST v1.10.4 fixes a bug when trying to specify a burnin on the command line version of LogCombiner. It also introduces two new command line options specific to BEAGLE v3.1 ( …

Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis. If you haven’t already, download and …

The BEAUti & The BEAST software package Bayesian Evolutionary Analysis Utility (BEAUti) BEAUti is a graphical user-interface (GUI) application for generating BEAST XML files. It is distributed in the …

This tutorial can be easily adapted to display and summarize annotated summary BEAST trees and prepare publication-ready figures for other datasets. FigTree - this is an application for displaying and …

Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees.

Tracer (now at version 1.7.2) is a software package for visualising and analysing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, …

Custom substitution models BEAUti provides a fairly standard selection of substitution models, but BEAST can deal with a wide range of possible models through XML specification. This can be done …

BEAST XML Elements The following is a list of valid elements in a beast file.